Source code for apache_beam.io.gcp.bigquery

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"""BigQuery sources and sinks.

This module implements reading from and writing to BigQuery tables. It relies
on several classes exposed by the BigQuery API: TableSchema, TableFieldSchema,
TableRow, and TableCell. The default mode is to return table rows read from a
BigQuery source as dictionaries. Similarly a Write transform to a BigQuerySink
accepts PCollections of dictionaries. This is done for more convenient
programming.  If desired, the native TableRow objects can be used throughout to
represent rows (use an instance of TableRowJsonCoder as a coder argument when
creating the sources or sinks respectively).

Also, for programming convenience, instances of TableReference and TableSchema
have a string representation that can be used for the corresponding arguments:

  - TableReference can be a PROJECT:DATASET.TABLE or DATASET.TABLE string.
  - TableSchema can be a NAME:TYPE{,NAME:TYPE}* string
    (e.g. 'month:STRING,event_count:INTEGER').

The syntax supported is described here:
https://cloud.google.com/bigquery/bq-command-line-tool-quickstart

BigQuery sources can be used as main inputs or side inputs. A main input
(common case) is expected to be massive and will be split into manageable chunks
and processed in parallel. Side inputs are expected to be small and will be read
completely every time a ParDo DoFn gets executed. In the example below the
lambda function implementing the DoFn for the Map transform will get on each
call *one* row of the main table and *all* rows of the side table. The runner
may use some caching techniques to share the side inputs between calls in order
to avoid excessive reading:::

  main_table = pipeline | 'VeryBig' >> beam.io.Read(beam.io.BigQuerySource()
  side_table = pipeline | 'NotBig' >> beam.io.Read(beam.io.BigQuerySource()
  results = (
      main_table
      | 'ProcessData' >> beam.Map(
          lambda element, side_input: ..., AsList(side_table)))

There is no difference in how main and side inputs are read. What makes the
side_table a 'side input' is the AsList wrapper used when passing the table
as a parameter to the Map transform. AsList signals to the execution framework
that its input should be made available whole.

The main and side inputs are implemented differently. Reading a BigQuery table
as main input entails exporting the table to a set of GCS files (currently in
JSON format) and then processing those files. Reading the same table as a side
input entails querying the table for all its rows. The coder argument on
BigQuerySource controls the reading of the lines in the export files (i.e.,
transform a JSON object into a PCollection element). The coder is not involved
when the same table is read as a side input since there is no intermediate
format involved. We get the table rows directly from the BigQuery service with
a query.

Users may provide a query to read from rather than reading all of a BigQuery
table. If specified, the result obtained by executing the specified query will
be used as the data of the input transform.::

  query_results = pipeline | beam.io.Read(beam.io.BigQuerySource(
      query='SELECT year, mean_temp FROM samples.weather_stations'))

When creating a BigQuery input transform, users should provide either a query
or a table. Pipeline construction will fail with a validation error if neither
or both are specified.

Writing Data to BigQuery
========================

The `WriteToBigQuery` transform is the recommended way of writing data to
BigQuery. It supports a large set of parameters to customize how you'd like to
write to BigQuery.

Table References
----------------

This transform allows you to provide static `project`, `dataset` and `table`
parameters which point to a specific BigQuery table to be created. The `table`
parameter can also be a dynamic parameter (i.e. a callable), which receives an
element to be written to BigQuery, and returns the table that that element
should be sent to.

You may also provide a tuple of PCollectionView elements to be passed as side
inputs to your callable. For example, suppose that one wishes to send
events of different types to different tables, and the table names are
computed at pipeline runtime, one may do something like the following::

    with Pipeline() as p:
      elements = (p | beam.Create([
        {'type': 'error', 'timestamp': '12:34:56', 'message': 'bad'},
        {'type': 'user_log', 'timestamp': '12:34:59', 'query': 'flu symptom'},
      ]))

      table_names = (p | beam.Create([
        ('error', 'my_project.dataset1.error_table_for_today'),
        ('user_log', 'my_project.dataset1.query_table_for_today'),
      ])

      table_names_dict = beam.pvalue.AsDict(table_names)

      elements | beam.io.gcp.WriteToBigQuery(
        table=lambda row, table_dict: table_dict[row['type']],
        table_side_inputs=(table_names_dict,))

In the example above, the `table_dict` argument passed to the function in
`table_dict` is the side input coming from `table_names_dict`, which is passed
as part of the `table_side_inputs` argument.

Schemas
---------

This transform also allows you to provide a static or dynamic `schema`
parameter (i.e. a callable).

If providing a callable, this should take in a table reference (as returned by
the `table` parameter), and return the corresponding schema for that table.
This allows to provide different schemas for different tables::

    def compute_table_name(row):
      ...

    errors_schema = {'fields': [
      {'name': 'type', 'type': 'STRING', 'mode': 'NULLABLE'},
      {'name': 'message', 'type': 'STRING', 'mode': 'NULLABLE'}]}
    queries_schema = {'fields': [
      {'name': 'type', 'type': 'STRING', 'mode': 'NULLABLE'},
      {'name': 'query', 'type': 'STRING', 'mode': 'NULLABLE'}]}

    with Pipeline() as p:
      elements = (p | beam.Create([
        {'type': 'error', 'timestamp': '12:34:56', 'message': 'bad'},
        {'type': 'user_log', 'timestamp': '12:34:59', 'query': 'flu symptom'},
      ]))

      elements | beam.io.gcp.WriteToBigQuery(
        table=compute_table_name,
        schema=lambda table: (errors_schema
                              if 'errors' in table
                              else queries_schema))

It may be the case that schemas are computed at pipeline runtime. In cases
like these, one can also provide a `schema_side_inputs` parameter, which is
a tuple of PCollectionViews to be passed to the schema callable (much like
the `table_side_inputs` parameter).

Additional Parameters for BigQuery Tables
-----------------------------------------

This sink is able to create tables in BigQuery if they don't already exist. It
also relies on creating temporary tables when performing file loads.

The WriteToBigQuery transform creates tables using the BigQuery API by
inserting a load job (see the API reference [1]), or by inserting a new table
(see the API reference for that [2][3]).

When creating a new BigQuery table, there are a number of extra parameters
that one may need to specify. For example, clustering, partitioning, data
encoding, etc. It is possible to provide these additional parameters by
passing a Python dictionary as `additional_bq_parameters` to the transform.
As an example, to create a table that has specific partitioning, and
clustering properties, one would do the following::

    additional_bq_parameters = {
      'timePartitioning': {'type': 'DAY'},
      'clustering': {'fields': ['country']}}
    with Pipeline() as p:
      elements = (p | beam.Create([
        {'country': 'mexico', 'timestamp': '12:34:56', 'query': 'acapulco'},
        {'country': 'canada', 'timestamp': '12:34:59', 'query': 'influenza'},
      ]))

      elements | beam.io.gcp.WriteToBigQuery(
        table='project_name1.dataset_2.query_events_table',
        additional_bq_parameters=additional_bq_parameters)

Much like the schema case, the parameter with `additional_bq_parameters` can
also take a callable that receives a table reference.


[1] https://cloud.google.com/bigquery/docs/reference/rest/v2/jobs#\
configuration.load
[2] https://cloud.google.com/bigquery/docs/reference/rest/v2/tables/insert
[3] https://cloud.google.com/bigquery/docs/reference/rest/v2/tables#resource


*** Short introduction to BigQuery concepts ***
Tables have rows (TableRow) and each row has cells (TableCell).
A table has a schema (TableSchema), which in turn describes the schema of each
cell (TableFieldSchema). The terms field and cell are used interchangeably.

TableSchema: Describes the schema (types and order) for values in each row.
  Has one attribute, 'field', which is list of TableFieldSchema objects.

TableFieldSchema: Describes the schema (type, name) for one field.
  Has several attributes, including 'name' and 'type'. Common values for
  the type attribute are: 'STRING', 'INTEGER', 'FLOAT', 'BOOLEAN', 'NUMERIC',
  'GEOGRAPHY'.
  All possible values are described at:
  https://cloud.google.com/bigquery/docs/reference/standard-sql/data-types

TableRow: Holds all values in a table row. Has one attribute, 'f', which is a
  list of TableCell instances.

TableCell: Holds the value for one cell (or field).  Has one attribute,
  'v', which is a JsonValue instance. This class is defined in
  apitools.base.py.extra_types.py module.

As of Beam 2.7.0, the NUMERIC data type is supported. This data type supports
high-precision decimal numbers (precision of 38 digits, scale of 9 digits).
The GEOGRAPHY data type works with Well-Known Text (See
https://en.wikipedia.org/wiki/Well-known_text) format for reading and writing
to BigQuery.
BigQuery IO requires values of BYTES datatype to be encoded using base64
encoding when writing to BigQuery. When bytes are read from BigQuery they are
returned as base64-encoded bytes.
"""

from __future__ import absolute_import

import collections
import itertools
import json
import logging
import time
import uuid
from builtins import object
from builtins import zip

from future.utils import itervalues
from past.builtins import unicode

import apache_beam as beam
from apache_beam import coders
from apache_beam import pvalue
from apache_beam.internal.gcp.json_value import from_json_value
from apache_beam.internal.gcp.json_value import to_json_value
from apache_beam.io.gcp import bigquery_tools
from apache_beam.io.gcp.internal.clients import bigquery
from apache_beam.options import value_provider as vp
from apache_beam.options.pipeline_options import DebugOptions
from apache_beam.options.pipeline_options import GoogleCloudOptions
from apache_beam.options.pipeline_options import StandardOptions
from apache_beam.runners.dataflow.native_io import iobase as dataflow_io
from apache_beam.transforms import DoFn
from apache_beam.transforms import ParDo
from apache_beam.transforms import PTransform
from apache_beam.transforms.display import DisplayDataItem
from apache_beam.transforms.window import GlobalWindows
from apache_beam.utils import retry
from apache_beam.utils.annotations import deprecated

__all__ = [
    'TableRowJsonCoder',
    'BigQueryDisposition',
    'BigQuerySource',
    'BigQuerySink',
    'WriteToBigQuery',
    'SCHEMA_AUTODETECT',
    ]


@deprecated(since='2.11.0', current="bigquery_tools.parse_table_reference")
def _parse_table_reference(table, dataset=None, project=None):
  return bigquery_tools.parse_table_reference(table, dataset, project)


@deprecated(since='2.11.0',
            current="bigquery_tools.parse_table_schema_from_json")
def parse_table_schema_from_json(schema_string):
  return bigquery_tools.parse_table_schema_from_json(schema_string)


@deprecated(since='2.11.0', current="bigquery_tools.default_encoder")
def default_encoder(obj):
  return bigquery_tools.default_encoder(obj)


@deprecated(since='2.11.0', current="bigquery_tools.RowAsDictJsonCoder")
def RowAsDictJsonCoder(*args, **kwargs):
  return bigquery_tools.RowAsDictJsonCoder(*args, **kwargs)


@deprecated(since='2.11.0', current="bigquery_tools.BigQueryReader")
def BigQueryReader(*args, **kwargs):
  return bigquery_tools.BigQueryReader(*args, **kwargs)


@deprecated(since='2.11.0', current="bigquery_tools.BigQueryWriter")
def BigQueryWriter(*args, **kwargs):
  return bigquery_tools.BigQueryWriter(*args, **kwargs)


@deprecated(since='2.11.0', current="bigquery_tools.BigQueryWrapper")
def BigQueryWrapper(*args, **kwargs):
  return bigquery_tools.BigQueryWrapper(*args, **kwargs)


[docs]class TableRowJsonCoder(coders.Coder): """A coder for a TableRow instance to/from a JSON string. Note that the encoding operation (used when writing to sinks) requires the table schema in order to obtain the ordered list of field names. Reading from sources on the other hand does not need the table schema. """ def __init__(self, table_schema=None): # The table schema is needed for encoding TableRows as JSON (writing to # sinks) because the ordered list of field names is used in the JSON # representation. self.table_schema = table_schema # Precompute field names since we need them for row encoding. if self.table_schema: self.field_names = tuple(fs.name for fs in self.table_schema.fields) self.field_types = tuple(fs.type for fs in self.table_schema.fields)
[docs] def encode(self, table_row): if self.table_schema is None: raise AttributeError( 'The TableRowJsonCoder requires a table schema for ' 'encoding operations. Please specify a table_schema argument.') try: return json.dumps( collections.OrderedDict( zip(self.field_names, [from_json_value(f.v) for f in table_row.f])), allow_nan=False, default=bigquery_tools.default_encoder) except ValueError as e: raise ValueError('%s. %s' % (e, bigquery_tools.JSON_COMPLIANCE_ERROR))
[docs] def decode(self, encoded_table_row): od = json.loads( encoded_table_row, object_pairs_hook=collections.OrderedDict) return bigquery.TableRow( f=[bigquery.TableCell(v=to_json_value(e)) for e in itervalues(od)])
[docs]class BigQueryDisposition(object): """Class holding standard strings used for create and write dispositions.""" CREATE_NEVER = 'CREATE_NEVER' CREATE_IF_NEEDED = 'CREATE_IF_NEEDED' WRITE_TRUNCATE = 'WRITE_TRUNCATE' WRITE_APPEND = 'WRITE_APPEND' WRITE_EMPTY = 'WRITE_EMPTY'
[docs] @staticmethod def validate_create(disposition): values = (BigQueryDisposition.CREATE_NEVER, BigQueryDisposition.CREATE_IF_NEEDED) if disposition not in values: raise ValueError( 'Invalid create disposition %s. Expecting %s' % (disposition, values)) return disposition
[docs] @staticmethod def validate_write(disposition): values = (BigQueryDisposition.WRITE_TRUNCATE, BigQueryDisposition.WRITE_APPEND, BigQueryDisposition.WRITE_EMPTY) if disposition not in values: raise ValueError( 'Invalid write disposition %s. Expecting %s' % (disposition, values)) return disposition
# ----------------------------------------------------------------------------- # BigQuerySource, BigQuerySink.
[docs]class BigQuerySource(dataflow_io.NativeSource): """A source based on a BigQuery table.""" def __init__(self, table=None, dataset=None, project=None, query=None, validate=False, coder=None, use_standard_sql=False, flatten_results=True, kms_key=None): """Initialize a :class:`BigQuerySource`. Args: table (str): The ID of a BigQuery table. If specified all data of the table will be used as input of the current source. The ID must contain only letters ``a-z``, ``A-Z``, numbers ``0-9``, or underscores ``_``. If dataset and query arguments are :data:`None` then the table argument must contain the entire table reference specified as: ``'DATASET.TABLE'`` or ``'PROJECT:DATASET.TABLE'``. dataset (str): The ID of the dataset containing this table or :data:`None` if the table reference is specified entirely by the table argument or a query is specified. project (str): The ID of the project containing this table or :data:`None` if the table reference is specified entirely by the table argument or a query is specified. query (str): A query to be used instead of arguments table, dataset, and project. validate (bool): If :data:`True`, various checks will be done when source gets initialized (e.g., is table present?). This should be :data:`True` for most scenarios in order to catch errors as early as possible (pipeline construction instead of pipeline execution). It should be :data:`False` if the table is created during pipeline execution by a previous step. coder (~apache_beam.coders.coders.Coder): The coder for the table rows if serialized to disk. If :data:`None`, then the default coder is :class:`~apache_beam.io.gcp.bigquery_tools.RowAsDictJsonCoder`, which will interpret every line in a file as a JSON serialized dictionary. This argument needs a value only in special cases when returning table rows as dictionaries is not desirable. use_standard_sql (bool): Specifies whether to use BigQuery's standard SQL dialect for this query. The default value is :data:`False`. If set to :data:`True`, the query will use BigQuery's updated SQL dialect with improved standards compliance. This parameter is ignored for table inputs. flatten_results (bool): Flattens all nested and repeated fields in the query results. The default value is :data:`True`. kms_key (str): Experimental. Optional Cloud KMS key name for use when creating new tables. Raises: ~exceptions.ValueError: if any of the following is true: 1) the table reference as a string does not match the expected format 2) neither a table nor a query is specified 3) both a table and a query is specified. """ # Import here to avoid adding the dependency for local running scenarios. try: # pylint: disable=wrong-import-order, wrong-import-position from apitools.base import py # pylint: disable=unused-import except ImportError: raise ImportError( 'Google Cloud IO not available, ' 'please install apache_beam[gcp]') if table is not None and query is not None: raise ValueError('Both a BigQuery table and a query were specified.' ' Please specify only one of these.') elif table is None and query is None: raise ValueError('A BigQuery table or a query must be specified') elif table is not None: self.table_reference = bigquery_tools.parse_table_reference( table, dataset, project) self.query = None self.use_legacy_sql = True else: self.query = query # TODO(BEAM-1082): Change the internal flag to be standard_sql self.use_legacy_sql = not use_standard_sql self.table_reference = None self.validate = validate self.flatten_results = flatten_results self.coder = coder or bigquery_tools.RowAsDictJsonCoder() self.kms_key = kms_key
[docs] def display_data(self): if self.query is not None: res = {'query': DisplayDataItem(self.query, label='Query')} else: if self.table_reference.projectId is not None: tableSpec = '{}:{}.{}'.format(self.table_reference.projectId, self.table_reference.datasetId, self.table_reference.tableId) else: tableSpec = '{}.{}'.format(self.table_reference.datasetId, self.table_reference.tableId) res = {'table': DisplayDataItem(tableSpec, label='Table')} res['validation'] = DisplayDataItem(self.validate, label='Validation Enabled') return res
@property def format(self): """Source format name required for remote execution.""" return 'bigquery'
[docs] def reader(self, test_bigquery_client=None): return bigquery_tools.BigQueryReader( source=self, test_bigquery_client=test_bigquery_client, use_legacy_sql=self.use_legacy_sql, flatten_results=self.flatten_results, kms_key=self.kms_key)
[docs]@deprecated(since='2.11.0', current="WriteToBigQuery") class BigQuerySink(dataflow_io.NativeSink): """A sink based on a BigQuery table. This BigQuery sink triggers a Dataflow native sink for BigQuery that only supports batch pipelines. Instead of using this sink directly, please use WriteToBigQuery transform that works for both batch and streaming pipelines. """ def __init__(self, table, dataset=None, project=None, schema=None, create_disposition=BigQueryDisposition.CREATE_IF_NEEDED, write_disposition=BigQueryDisposition.WRITE_EMPTY, validate=False, coder=None, kms_key=None): """Initialize a BigQuerySink. Args: table (str): The ID of the table. The ID must contain only letters ``a-z``, ``A-Z``, numbers ``0-9``, or underscores ``_``. If **dataset** argument is :data:`None` then the table argument must contain the entire table reference specified as: ``'DATASET.TABLE'`` or ``'PROJECT:DATASET.TABLE'``. dataset (str): The ID of the dataset containing this table or :data:`None` if the table reference is specified entirely by the table argument. project (str): The ID of the project containing this table or :data:`None` if the table reference is specified entirely by the table argument. schema (str): The schema to be used if the BigQuery table to write has to be created. This can be either specified as a :class:`~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema` object or a single string of the form ``'field1:type1,field2:type2,field3:type3'`` that defines a comma separated list of fields. Here ``'type'`` should specify the BigQuery type of the field. Single string based schemas do not support nested fields, repeated fields, or specifying a BigQuery mode for fields (mode will always be set to ``'NULLABLE'``). create_disposition (BigQueryDisposition): A string describing what happens if the table does not exist. Possible values are: * :attr:`BigQueryDisposition.CREATE_IF_NEEDED`: create if does not exist. * :attr:`BigQueryDisposition.CREATE_NEVER`: fail the write if does not exist. write_disposition (BigQueryDisposition): A string describing what happens if the table has already some data. Possible values are: * :attr:`BigQueryDisposition.WRITE_TRUNCATE`: delete existing rows. * :attr:`BigQueryDisposition.WRITE_APPEND`: add to existing rows. * :attr:`BigQueryDisposition.WRITE_EMPTY`: fail the write if table not empty. validate (bool): If :data:`True`, various checks will be done when sink gets initialized (e.g., is table present given the disposition arguments?). This should be :data:`True` for most scenarios in order to catch errors as early as possible (pipeline construction instead of pipeline execution). It should be :data:`False` if the table is created during pipeline execution by a previous step. coder (~apache_beam.coders.coders.Coder): The coder for the table rows if serialized to disk. If :data:`None`, then the default coder is :class:`~apache_beam.io.gcp.bigquery_tools.RowAsDictJsonCoder`, which will interpret every element written to the sink as a dictionary that will be JSON serialized as a line in a file. This argument needs a value only in special cases when writing table rows as dictionaries is not desirable. kms_key (str): Experimental. Optional Cloud KMS key name for use when creating new tables. Raises: ~exceptions.TypeError: if the schema argument is not a :class:`str` or a :class:`~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema` object. ~exceptions.ValueError: if the table reference as a string does not match the expected format. """ # Import here to avoid adding the dependency for local running scenarios. try: # pylint: disable=wrong-import-order, wrong-import-position from apitools.base import py # pylint: disable=unused-import except ImportError: raise ImportError( 'Google Cloud IO not available, ' 'please install apache_beam[gcp]') self.table_reference = bigquery_tools.parse_table_reference( table, dataset, project) # Transform the table schema into a bigquery.TableSchema instance. if isinstance(schema, (str, unicode)): # TODO(silviuc): Should add a regex-based validation of the format. table_schema = bigquery.TableSchema() schema_list = [s.strip(' ') for s in schema.split(',')] for field_and_type in schema_list: field_name, field_type = field_and_type.split(':') field_schema = bigquery.TableFieldSchema() field_schema.name = field_name field_schema.type = field_type field_schema.mode = 'NULLABLE' table_schema.fields.append(field_schema) self.table_schema = table_schema elif schema is None: # TODO(silviuc): Should check that table exists if no schema specified. self.table_schema = schema elif isinstance(schema, bigquery.TableSchema): self.table_schema = schema else: raise TypeError('Unexpected schema argument: %s.' % schema) self.create_disposition = BigQueryDisposition.validate_create( create_disposition) self.write_disposition = BigQueryDisposition.validate_write( write_disposition) self.validate = validate self.coder = coder or bigquery_tools.RowAsDictJsonCoder() self.kms_key = kms_key
[docs] def display_data(self): res = {} if self.table_reference is not None: tableSpec = '{}.{}'.format(self.table_reference.datasetId, self.table_reference.tableId) if self.table_reference.projectId is not None: tableSpec = '{}:{}'.format(self.table_reference.projectId, tableSpec) res['table'] = DisplayDataItem(tableSpec, label='Table') res['validation'] = DisplayDataItem(self.validate, label="Validation Enabled") return res
[docs] def schema_as_json(self): """Returns the TableSchema associated with the sink as a JSON string.""" def schema_list_as_object(schema_list): """Returns a list of TableFieldSchema objects as a list of dicts.""" fields = [] for f in schema_list: fs = {'name': f.name, 'type': f.type} if f.description is not None: fs['description'] = f.description if f.mode is not None: fs['mode'] = f.mode if f.type.lower() == 'record': fs['fields'] = schema_list_as_object(f.fields) fields.append(fs) return fields return json.dumps( {'fields': schema_list_as_object(self.table_schema.fields)})
@property def format(self): """Sink format name required for remote execution.""" return 'bigquery'
[docs] def writer(self, test_bigquery_client=None, buffer_size=None): return bigquery_tools.BigQueryWriter( sink=self, test_bigquery_client=test_bigquery_client, buffer_size=buffer_size)
class BigQueryWriteFn(DoFn): """A ``DoFn`` that streams writes to BigQuery once the table is created.""" DEFAULT_MAX_BUFFERED_ROWS = 2000 DEFAULT_MAX_BATCH_SIZE = 500 FAILED_ROWS = 'FailedRows' def __init__( self, batch_size, schema=None, create_disposition=None, write_disposition=None, kms_key=None, test_client=None, max_buffered_rows=None, retry_strategy=None, additional_bq_parameters=None): """Initialize a WriteToBigQuery transform. Args: batch_size: Number of rows to be written to BQ per streaming API insert. schema: The schema to be used if the BigQuery table to write has to be created. This can be either specified as a 'bigquery.TableSchema' object or a single string of the form 'field1:type1,field2:type2,field3:type3' that defines a comma separated list of fields. Here 'type' should specify the BigQuery type of the field. Single string based schemas do not support nested fields, repeated fields, or specifying a BigQuery mode for fields (mode will always be set to 'NULLABLE'). create_disposition: A string describing what happens if the table does not exist. Possible values are: - BigQueryDisposition.CREATE_IF_NEEDED: create if does not exist. - BigQueryDisposition.CREATE_NEVER: fail the write if does not exist. write_disposition: A string describing what happens if the table has already some data. Possible values are: - BigQueryDisposition.WRITE_TRUNCATE: delete existing rows. - BigQueryDisposition.WRITE_APPEND: add to existing rows. - BigQueryDisposition.WRITE_EMPTY: fail the write if table not empty. For streaming pipelines WriteTruncate can not be used. kms_key: Experimental. Optional Cloud KMS key name for use when creating new tables. test_client: Override the default bigquery client used for testing. max_buffered_rows: The maximum number of rows that are allowed to stay buffered when running dynamic destinations. When destinations are dynamic, it is important to keep caches small even when a single batch has not been completely filled up. retry_strategy: The strategy to use when retrying streaming inserts into BigQuery. Options are shown in bigquery_tools.RetryStrategy attrs. additional_bq_parameters (dict, callable): A set of additional parameters to be passed when creating a BigQuery table. These are passed when triggering a load job for FILE_LOADS, and when creating a new table for STREAMING_INSERTS. """ self.schema = schema self.test_client = test_client self.create_disposition = create_disposition self.write_disposition = write_disposition self._rows_buffer = [] self._reset_rows_buffer() self._observed_tables = set() self._total_buffered_rows = 0 self.kms_key = kms_key self._max_batch_size = batch_size or BigQueryWriteFn.DEFAULT_MAX_BATCH_SIZE self._max_buffered_rows = (max_buffered_rows or BigQueryWriteFn.DEFAULT_MAX_BUFFERED_ROWS) self._retry_strategy = ( retry_strategy or bigquery_tools.RetryStrategy.RETRY_ALWAYS) self.additional_bq_parameters = additional_bq_parameters or {} def display_data(self): return {'max_batch_size': self._max_batch_size, 'max_buffered_rows': self._max_buffered_rows, 'retry_strategy': self._retry_strategy, 'create_disposition': str(self.create_disposition), 'write_disposition': str(self.write_disposition), 'additional_bq_parameters': str(self.additional_bq_parameters)} def _reset_rows_buffer(self): self._rows_buffer = collections.defaultdict(lambda: []) @staticmethod def get_table_schema(schema): """Transform the table schema into a bigquery.TableSchema instance. Args: schema: The schema to be used if the BigQuery table to write has to be created. This is a dictionary object created in the WriteToBigQuery transform. Returns: table_schema: The schema to be used if the BigQuery table to write has to be created but in the bigquery.TableSchema format. """ if schema is None: return schema elif isinstance(schema, (str, unicode)): return bigquery_tools.parse_table_schema_from_json(schema) elif isinstance(schema, dict): return bigquery_tools.parse_table_schema_from_json(json.dumps(schema)) else: raise TypeError('Unexpected schema argument: %s.' % schema) def start_bundle(self): self._reset_rows_buffer() self.bigquery_wrapper = bigquery_tools.BigQueryWrapper( client=self.test_client) self._observed_tables = set() self._backoff_calculator = iter(retry.FuzzedExponentialIntervals( initial_delay_secs=0.2, num_retries=10000, max_delay_secs=1500)) def _create_table_if_needed(self, table_reference, schema=None): str_table_reference = '%s:%s.%s' % ( table_reference.projectId, table_reference.datasetId, table_reference.tableId) if str_table_reference in self._observed_tables: return if self.create_disposition == BigQueryDisposition.CREATE_NEVER: # If we never want to create the table, we assume it already exists, # and avoid the get-or-create step. return logging.debug('Creating or getting table %s with schema %s.', table_reference, schema) table_schema = self.get_table_schema(schema) if table_reference.projectId is None: table_reference.projectId = vp.RuntimeValueProvider.get_value( 'project', str, '') self.bigquery_wrapper.get_or_create_table( table_reference.projectId, table_reference.datasetId, table_reference.tableId, table_schema, self.create_disposition, self.write_disposition, additional_create_parameters=self.additional_bq_parameters) self._observed_tables.add(str_table_reference) def process(self, element, *schema_side_inputs): destination = element[0] if callable(self.schema): schema = self.schema(destination, *schema_side_inputs) elif isinstance(self.schema, vp.ValueProvider): schema = self.schema.get() else: schema = self.schema self._create_table_if_needed( bigquery_tools.parse_table_reference(destination), schema) destination = bigquery_tools.get_hashable_destination(destination) row_and_insert_id = element[1] self._rows_buffer[destination].append(row_and_insert_id) self._total_buffered_rows += 1 if len(self._rows_buffer[destination]) >= self._max_batch_size: return self._flush_batch(destination) elif self._total_buffered_rows >= self._max_buffered_rows: return self._flush_all_batches() def finish_bundle(self): return self._flush_all_batches() def _flush_all_batches(self): logging.debug('Attempting to flush to all destinations. Total buffered: %s', self._total_buffered_rows) return itertools.chain(*[self._flush_batch(destination) for destination in list(self._rows_buffer.keys()) if self._rows_buffer[destination]]) def _flush_batch(self, destination): # Flush the current batch of rows to BigQuery. rows_and_insert_ids = self._rows_buffer[destination] table_reference = bigquery_tools.parse_table_reference(destination) if table_reference.projectId is None: table_reference.projectId = vp.RuntimeValueProvider.get_value( 'project', str, '') logging.debug('Flushing data to %s. Total %s rows.', destination, len(rows_and_insert_ids)) rows = [r[0] for r in rows_and_insert_ids] insert_ids = [r[1] for r in rows_and_insert_ids] while True: passed, errors = self.bigquery_wrapper.insert_rows( project_id=table_reference.projectId, dataset_id=table_reference.datasetId, table_id=table_reference.tableId, rows=rows, insert_ids=insert_ids, skip_invalid_rows=True) if not passed: logging.info("There were errors inserting to BigQuery: %s", errors) failed_rows = [rows[entry.index] for entry in errors] should_retry = any( bigquery_tools.RetryStrategy.should_retry( self._retry_strategy, entry.errors[0].reason) for entry in errors) rows = failed_rows if not should_retry: break else: retry_backoff = next(self._backoff_calculator) logging.info('Sleeping %s seconds before retrying insertion.', retry_backoff) time.sleep(retry_backoff) self._total_buffered_rows -= len(self._rows_buffer[destination]) del self._rows_buffer[destination] return [pvalue.TaggedOutput(BigQueryWriteFn.FAILED_ROWS, GlobalWindows.windowed_value( (destination, row))) for row in failed_rows] class _StreamToBigQuery(PTransform): def __init__(self, table_reference, table_side_inputs, schema_side_inputs, schema, batch_size, create_disposition, write_disposition, kms_key, retry_strategy, additional_bq_parameters, test_client=None): self.table_reference = table_reference self.table_side_inputs = table_side_inputs self.schema_side_inputs = schema_side_inputs self.schema = schema self.batch_size = batch_size self.create_disposition = create_disposition self.write_disposition = write_disposition self.kms_key = kms_key self.retry_strategy = retry_strategy self.test_client = test_client self.additional_bq_parameters = additional_bq_parameters class InsertIdPrefixFn(DoFn): def start_bundle(self): self.prefix = str(uuid.uuid4()) self._row_count = 0 def process(self, element): key = element[0] value = element[1] insert_id = '%s-%s' % (self.prefix, self._row_count) self._row_count += 1 yield (key, (value, insert_id)) def expand(self, input): bigquery_write_fn = BigQueryWriteFn( schema=self.schema, batch_size=self.batch_size, create_disposition=self.create_disposition, write_disposition=self.write_disposition, kms_key=self.kms_key, retry_strategy=self.retry_strategy, test_client=self.test_client, additional_bq_parameters=self.additional_bq_parameters) return (input | 'AppendDestination' >> beam.ParDo( bigquery_tools.AppendDestinationsFn(self.table_reference), *self.table_side_inputs) | 'AddInsertIds' >> beam.ParDo(_StreamToBigQuery.InsertIdPrefixFn()) | 'CommitInsertIds' >> beam.Reshuffle() | 'StreamInsertRows' >> ParDo( bigquery_write_fn, *self.schema_side_inputs).with_outputs( BigQueryWriteFn.FAILED_ROWS, main='main')) # Flag to be passed to WriteToBigQuery to force schema autodetection SCHEMA_AUTODETECT = 'SCHEMA_AUTODETECT'
[docs]class WriteToBigQuery(PTransform): """Write data to BigQuery. This transform receives a PCollection of elements to be inserted into BigQuery tables. The elements would come in as Python dictionaries, or as `TableRow` instances. """
[docs] class Method(object): DEFAULT = 'DEFAULT' STREAMING_INSERTS = 'STREAMING_INSERTS' FILE_LOADS = 'FILE_LOADS'
def __init__(self, table, dataset=None, project=None, schema=None, create_disposition=BigQueryDisposition.CREATE_IF_NEEDED, write_disposition=BigQueryDisposition.WRITE_APPEND, kms_key=None, batch_size=None, max_file_size=None, max_files_per_bundle=None, test_client=None, custom_gcs_temp_location=None, method=None, insert_retry_strategy=None, additional_bq_parameters=None, table_side_inputs=None, schema_side_inputs=None, triggering_frequency=None, validate=True): """Initialize a WriteToBigQuery transform. Args: table (str, callable, ValueProvider): The ID of the table, or a callable that returns it. The ID must contain only letters ``a-z``, ``A-Z``, numbers ``0-9``, or underscores ``_``. If dataset argument is :data:`None` then the table argument must contain the entire table reference specified as: ``'DATASET.TABLE'`` or ``'PROJECT:DATASET.TABLE'``. If it's a callable, it must receive one argument representing an element to be written to BigQuery, and return a TableReference, or a string table name as specified above. Multiple destinations are only supported on Batch pipelines at the moment. dataset (str): The ID of the dataset containing this table or :data:`None` if the table reference is specified entirely by the table argument. project (str): The ID of the project containing this table or :data:`None` if the table reference is specified entirely by the table argument. schema (str,dict,ValueProvider,callable): The schema to be used if the BigQuery table to write has to be created. This can be either specified as a :class:`~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema`. or a `ValueProvider` that has a JSON string, or a python dictionary, or the string or dictionary itself, object or a single string of the form ``'field1:type1,field2:type2,field3:type3'`` that defines a comma separated list of fields. Here ``'type'`` should specify the BigQuery type of the field. Single string based schemas do not support nested fields, repeated fields, or specifying a BigQuery mode for fields (mode will always be set to ``'NULLABLE'``). If a callable, then it should receive a destination (in the form of a TableReference or a string, and return a str, dict or TableSchema. One may also pass ``SCHEMA_AUTODETECT`` here, and BigQuery will try to infer the schema for the files that are being loaded. create_disposition (BigQueryDisposition): A string describing what happens if the table does not exist. Possible values are: * :attr:`BigQueryDisposition.CREATE_IF_NEEDED`: create if does not exist. * :attr:`BigQueryDisposition.CREATE_NEVER`: fail the write if does not exist. write_disposition (BigQueryDisposition): A string describing what happens if the table has already some data. Possible values are: * :attr:`BigQueryDisposition.WRITE_TRUNCATE`: delete existing rows. * :attr:`BigQueryDisposition.WRITE_APPEND`: add to existing rows. * :attr:`BigQueryDisposition.WRITE_EMPTY`: fail the write if table not empty. For streaming pipelines WriteTruncate can not be used. kms_key (str): Experimental. Optional Cloud KMS key name for use when creating new tables. batch_size (int): Number of rows to be written to BQ per streaming API insert. The default is 500. insert. test_client: Override the default bigquery client used for testing. max_file_size (int): The maximum size for a file to be written and then loaded into BigQuery. The default value is 4TB, which is 80% of the limit of 5TB for BigQuery to load any file. max_files_per_bundle(int): The maximum number of files to be concurrently written by a worker. The default here is 20. Larger values will allow writing to multiple destinations without having to reshard - but they increase the memory burden on the workers. custom_gcs_temp_location (str): A GCS location to store files to be used for file loads into BigQuery. By default, this will use the pipeline's temp_location, but for pipelines whose temp_location is not appropriate for BQ File Loads, users should pass a specific one. method: The method to use to write to BigQuery. It may be STREAMING_INSERTS, FILE_LOADS, or DEFAULT. An introduction on loading data to BigQuery: https://cloud.google.com/bigquery/docs/loading-data. DEFAULT will use STREAMING_INSERTS on Streaming pipelines and FILE_LOADS on Batch pipelines. insert_retry_strategy: The strategy to use when retrying streaming inserts into BigQuery. Options are shown in bigquery_tools.RetryStrategy attrs. Default is to retry always. This means that whenever there are rows that fail to be inserted to BigQuery, they will be retried indefinitely. Other retry strategy settings will produce a deadletter PCollection as output. additional_bq_parameters (callable): A function that returns a dictionary with additional parameters to pass to BQ when creating / loading data into a table. These can be 'timePartitioning', 'clustering', etc. They are passed directly to the job load configuration. See https://cloud.google.com/bigquery/docs/reference/rest/v2/jobs#configuration.load table_side_inputs (tuple): A tuple with ``AsSideInput`` PCollections to be passed to the table callable (if one is provided). schema_side_inputs: A tuple with ``AsSideInput`` PCollections to be passed to the schema callable (if one is provided). triggering_frequency (int): Every triggering_frequency duration, a BigQuery load job will be triggered for all the data written since the last load job. BigQuery has limits on how many load jobs can be triggered per day, so be careful not to set this duration too low, or you may exceed daily quota. Often this is set to 5 or 10 minutes to ensure that the project stays well under the BigQuery quota. See https://cloud.google.com/bigquery/quota-policy for more information about BigQuery quotas. validate: Indicates whether to perform validation checks on inputs. This parameter is primarily used for testing. """ self.table_reference = bigquery_tools.parse_table_reference( table, dataset, project) self.create_disposition = BigQueryDisposition.validate_create( create_disposition) self.write_disposition = BigQueryDisposition.validate_write( write_disposition) if schema == SCHEMA_AUTODETECT: self.schema = schema else: self.schema = WriteToBigQuery.get_dict_table_schema(schema) self.batch_size = batch_size self.kms_key = kms_key self.test_client = test_client # TODO(pabloem): Consider handling ValueProvider for this location. self.custom_gcs_temp_location = custom_gcs_temp_location self.max_file_size = max_file_size self.max_files_per_bundle = max_files_per_bundle self.method = method or WriteToBigQuery.Method.DEFAULT self.triggering_frequency = triggering_frequency self.insert_retry_strategy = insert_retry_strategy self._validate = validate self.additional_bq_parameters = additional_bq_parameters or {} self.table_side_inputs = table_side_inputs or () self.schema_side_inputs = schema_side_inputs or ()
[docs] @staticmethod def get_table_schema_from_string(schema): """Transform the string table schema into a :class:`~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema` instance. Args: schema (str): The sting schema to be used if the BigQuery table to write has to be created. Returns: ~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema: The schema to be used if the BigQuery table to write has to be created but in the :class:`~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema` format. """ table_schema = bigquery.TableSchema() schema_list = [s.strip() for s in schema.split(',')] for field_and_type in schema_list: field_name, field_type = field_and_type.split(':') field_schema = bigquery.TableFieldSchema() field_schema.name = field_name field_schema.type = field_type field_schema.mode = 'NULLABLE' table_schema.fields.append(field_schema) return table_schema
[docs] @staticmethod def table_schema_to_dict(table_schema): """Create a dictionary representation of table schema for serialization """ def get_table_field(field): """Create a dictionary representation of a table field """ result = {} result['name'] = field.name result['type'] = field.type result['mode'] = getattr(field, 'mode', 'NULLABLE') if hasattr(field, 'description') and field.description is not None: result['description'] = field.description if hasattr(field, 'fields') and field.fields: result['fields'] = [get_table_field(f) for f in field.fields] return result if not isinstance(table_schema, bigquery.TableSchema): raise ValueError("Table schema must be of the type bigquery.TableSchema") schema = {'fields': []} for field in table_schema.fields: schema['fields'].append(get_table_field(field)) return schema
[docs] @staticmethod def get_dict_table_schema(schema): """Transform the table schema into a dictionary instance. Args: schema (~apache_beam.io.gcp.internal.clients.bigquery.\ bigquery_v2_messages.TableSchema): The schema to be used if the BigQuery table to write has to be created. This can either be a dict or string or in the TableSchema format. Returns: Dict[str, Any]: The schema to be used if the BigQuery table to write has to be created but in the dictionary format. """ if (isinstance(schema, (dict, vp.ValueProvider)) or callable(schema) or schema is None): return schema elif isinstance(schema, (str, unicode)): table_schema = WriteToBigQuery.get_table_schema_from_string(schema) return WriteToBigQuery.table_schema_to_dict(table_schema) elif isinstance(schema, bigquery.TableSchema): return WriteToBigQuery.table_schema_to_dict(schema) else: raise TypeError('Unexpected schema argument: %s.' % schema)
def _compute_method(self, experiments, is_streaming_pipeline): # If the new BQ sink is not activated for experiment flags, then we use # streaming inserts by default (it gets overridden in dataflow_runner.py). if 'use_beam_bq_sink' not in experiments: return self.Method.STREAMING_INSERTS elif self.method == self.Method.DEFAULT and is_streaming_pipeline: return self.Method.STREAMING_INSERTS elif self.method == self.Method.DEFAULT and not is_streaming_pipeline: return self.Method.FILE_LOADS else: return self.method
[docs] def expand(self, pcoll): p = pcoll.pipeline if (isinstance(self.table_reference, bigquery.TableReference) and self.table_reference.projectId is None): self.table_reference.projectId = pcoll.pipeline.options.view_as( GoogleCloudOptions).project experiments = p.options.view_as(DebugOptions).experiments or [] # TODO(pabloem): Use a different method to determine if streaming or batch. is_streaming_pipeline = p.options.view_as(StandardOptions).streaming method_to_use = self._compute_method(experiments, is_streaming_pipeline) if (method_to_use == WriteToBigQuery.Method.STREAMING_INSERTS and self.schema == SCHEMA_AUTODETECT): raise ValueError('Schema auto-detection is not supported for streaming ' 'inserts into BigQuery. Only for File Loads.') if method_to_use == WriteToBigQuery.Method.STREAMING_INSERTS: if self.triggering_frequency: raise ValueError('triggering_frequency can only be used with ' 'FILE_LOADS method of writing to BigQuery.') outputs = pcoll | _StreamToBigQuery(self.table_reference, self.table_side_inputs, self.schema_side_inputs, self.schema, self.batch_size, self.create_disposition, self.write_disposition, self.kms_key, self.insert_retry_strategy, self.additional_bq_parameters, test_client=self.test_client) return {BigQueryWriteFn.FAILED_ROWS: outputs[BigQueryWriteFn.FAILED_ROWS]} else: from apache_beam.io.gcp import bigquery_file_loads return pcoll | bigquery_file_loads.BigQueryBatchFileLoads( destination=self.table_reference, schema=self.schema, create_disposition=self.create_disposition, write_disposition=self.write_disposition, triggering_frequency=self.triggering_frequency, max_file_size=self.max_file_size, max_files_per_bundle=self.max_files_per_bundle, custom_gcs_temp_location=self.custom_gcs_temp_location, test_client=self.test_client, table_side_inputs=self.table_side_inputs, schema_side_inputs=self.schema_side_inputs, additional_bq_parameters=self.additional_bq_parameters, validate=self._validate, is_streaming_pipeline=is_streaming_pipeline)
[docs] def display_data(self): res = {} if self.table_reference is not None: tableSpec = '{}.{}'.format(self.table_reference.datasetId, self.table_reference.tableId) if self.table_reference.projectId is not None: tableSpec = '{}:{}'.format(self.table_reference.projectId, tableSpec) res['table'] = DisplayDataItem(tableSpec, label='Table') return res