#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
"""A library of basic combiner PTransform subclasses."""
from __future__ import absolute_import
import operator
import random
from apache_beam.transforms import core
from apache_beam.transforms import cy_combiners
from apache_beam.transforms import ptransform
from apache_beam.transforms.display import DisplayDataItem
from apache_beam.typehints import KV
from apache_beam.typehints import Any
from apache_beam.typehints import Dict
from apache_beam.typehints import List
from apache_beam.typehints import Tuple
from apache_beam.typehints import TypeVariable
from apache_beam.typehints import Union
from apache_beam.typehints import with_input_types
from apache_beam.typehints import with_output_types
__all__ = [
'Count',
'Mean',
'Sample',
'Top',
'ToDict',
'ToList',
]
# Type variables
T = TypeVariable('T')
K = TypeVariable('K')
V = TypeVariable('V')
[docs]class Mean(object):
"""Combiners for computing arithmetic means of elements."""
[docs] class Globally(ptransform.PTransform):
"""combiners.Mean.Globally computes the arithmetic mean of the elements."""
[docs] def expand(self, pcoll):
return pcoll | core.CombineGlobally(MeanCombineFn())
[docs] class PerKey(ptransform.PTransform):
"""combiners.Mean.PerKey finds the means of the values for each key."""
[docs] def expand(self, pcoll):
return pcoll | core.CombinePerKey(MeanCombineFn())
# TODO(laolu): This type signature is overly restrictive. This should be
# more general.
@with_input_types(Union[float, int, long])
@with_output_types(float)
class MeanCombineFn(core.CombineFn):
"""CombineFn for computing an arithmetic mean."""
def create_accumulator(self):
return (0, 0)
def add_input(self, sum_count, element):
(sum_, count) = sum_count
return sum_ + element, count + 1
def merge_accumulators(self, accumulators):
sums, counts = zip(*accumulators)
return sum(sums), sum(counts)
def extract_output(self, sum_count):
(sum_, count) = sum_count
if count == 0:
return float('NaN')
return sum_ / float(count)
def for_input_type(self, input_type):
if input_type is int:
return cy_combiners.MeanInt64Fn()
elif input_type is float:
return cy_combiners.MeanFloatFn()
return self
[docs]class Count(object):
"""Combiners for counting elements."""
[docs] class Globally(ptransform.PTransform):
"""combiners.Count.Globally counts the total number of elements."""
[docs] def expand(self, pcoll):
return pcoll | core.CombineGlobally(CountCombineFn())
[docs] class PerKey(ptransform.PTransform):
"""combiners.Count.PerKey counts how many elements each unique key has."""
[docs] def expand(self, pcoll):
return pcoll | core.CombinePerKey(CountCombineFn())
[docs] class PerElement(ptransform.PTransform):
"""combiners.Count.PerElement counts how many times each element occurs."""
[docs] def expand(self, pcoll):
paired_with_void_type = KV[pcoll.element_type, Any]
return (pcoll
| ('%s:PairWithVoid' % self.label >> core.Map(lambda x: (x, None))
.with_output_types(paired_with_void_type))
| core.CombinePerKey(CountCombineFn()))
@with_input_types(Any)
@with_output_types(int)
class CountCombineFn(core.CombineFn):
"""CombineFn for computing PCollection size."""
def create_accumulator(self):
return 0
def add_input(self, accumulator, element):
return accumulator + 1
def add_inputs(self, accumulator, elements):
return accumulator + len(elements)
def merge_accumulators(self, accumulators):
return sum(accumulators)
def extract_output(self, accumulator):
return accumulator
[docs]class Top(object):
"""Combiners for obtaining extremal elements."""
# pylint: disable=no-self-argument
@staticmethod
@ptransform.ptransform_fn
def Of(pcoll, n, compare=None, *args, **kwargs):
"""Obtain a list of the compare-most N elements in a PCollection.
This transform will retrieve the n greatest elements in the PCollection
to which it is applied, where "greatest" is determined by the comparator
function supplied as the compare argument.
compare should be an implementation of "a < b" taking at least two arguments
(a and b). Additional arguments and side inputs specified in the apply call
become additional arguments to the comparator. Defaults to the natural
ordering of the elements.
The arguments 'key' and 'reverse' may instead be passed as keyword
arguments, and have the same meaning as for Python's sort functions.
Args:
pcoll: PCollection to process.
n: number of elements to extract from pcoll.
compare: as described above.
*args: as described above.
**kwargs: as described above.
"""
key = kwargs.pop('key', None)
reverse = kwargs.pop('reverse', False)
return pcoll | core.CombineGlobally(
TopCombineFn(n, compare, key, reverse), *args, **kwargs)
@staticmethod
@ptransform.ptransform_fn
def PerKey(pcoll, n, compare=None, *args, **kwargs):
"""Identifies the compare-most N elements associated with each key.
This transform will produce a PCollection mapping unique keys in the input
PCollection to the n greatest elements with which they are associated, where
"greatest" is determined by the comparator function supplied as the compare
argument.
compare should be an implementation of "a < b" taking at least two arguments
(a and b). Additional arguments and side inputs specified in the apply call
become additional arguments to the comparator. Defaults to the natural
ordering of the elements.
The arguments 'key' and 'reverse' may instead be passed as keyword
arguments, and have the same meaning as for Python's sort functions.
Args:
pcoll: PCollection to process.
n: number of elements to extract from pcoll.
compare: as described above.
*args: as described above.
**kwargs: as described above.
Raises:
TypeCheckError: If the output type of the input PCollection is not
compatible with KV[A, B].
"""
key = kwargs.pop('key', None)
reverse = kwargs.pop('reverse', False)
return pcoll | core.CombinePerKey(
TopCombineFn(n, compare, key, reverse), *args, **kwargs)
@staticmethod
@ptransform.ptransform_fn
def Largest(pcoll, n):
"""Obtain a list of the greatest N elements in a PCollection."""
return pcoll | Top.Of(n)
@staticmethod
@ptransform.ptransform_fn
def Smallest(pcoll, n):
"""Obtain a list of the least N elements in a PCollection."""
return pcoll | Top.Of(n, reverse=True)
@staticmethod
@ptransform.ptransform_fn
def LargestPerKey(pcoll, n):
"""Identifies the N greatest elements associated with each key."""
return pcoll | Top.PerKey(n)
@staticmethod
@ptransform.ptransform_fn
def SmallestPerKey(pcoll, n, reverse=True):
"""Identifies the N least elements associated with each key."""
return pcoll | Top.PerKey(n, reverse=True)
@with_input_types(T)
@with_output_types(List[T])
class TopCombineFn(core.CombineFn):
"""CombineFn doing the combining for all of the Top transforms.
This CombineFn uses a key or comparison operator to rank the elements.
Args:
compare: (optional) an implementation of "a < b" taking at least two
arguments (a and b). Additional arguments and side inputs specified
in the apply call become additional arguments to the comparator.
key: (optional) a mapping of elements to a comparable key, similar to
the key argument of Python's sorting methods.
reverse: (optional) whether to order things smallest to largest, rather
than largest to smallest
"""
_MIN_BUFFER_OVERSIZE = 100
_MAX_BUFFER_OVERSIZE = 1000
# TODO(robertwb): Allow taking a key rather than a compare.
def __init__(self, n, compare=None, key=None, reverse=False):
self._n = n
self._buffer_size = max(
min(2 * n, n + TopCombineFn._MAX_BUFFER_OVERSIZE),
n + TopCombineFn._MIN_BUFFER_OVERSIZE)
if compare is operator.lt:
compare = None
elif compare is operator.gt:
compare = None
reverse = not reverse
if compare:
self._compare = (
(lambda a, b, *args, **kwargs: not compare(a, b, *args, **kwargs))
if reverse
else compare)
else:
self._compare = operator.gt if reverse else operator.lt
self._key_fn = key
self._reverse = reverse
def _sort_buffer(self, buffer, lt):
if lt in (operator.gt, operator.lt):
buffer.sort(key=self._key_fn, reverse=self._reverse)
else:
buffer.sort(cmp=lambda a, b: (not lt(a, b)) - (not lt(b, a)),
key=self._key_fn)
def display_data(self):
return {'n': self._n,
'compare': DisplayDataItem(self._compare.__name__
if hasattr(self._compare, '__name__')
else self._compare.__class__.__name__)
.drop_if_none()}
# The accumulator type is a tuple (threshold, buffer), where threshold
# is the smallest element [key] that could possibly be in the top n based
# on the elements observed so far, and buffer is a (periodically sorted)
# list of candidates of bounded size.
def create_accumulator(self, *args, **kwargs):
return None, []
def add_input(self, accumulator, element, *args, **kwargs):
if args or kwargs:
lt = lambda a, b: self._compare(a, b, *args, **kwargs)
else:
lt = self._compare
threshold, buffer = accumulator
element_key = self._key_fn(element) if self._key_fn else element
if len(buffer) < self._n:
if not buffer:
return element_key, [element]
buffer.append(element)
if lt(element_key, threshold): # element_key < threshold
return element_key, buffer
return accumulator # with mutated buffer
elif lt(threshold, element_key): # threshold < element_key
buffer.append(element)
if len(buffer) < self._buffer_size:
return accumulator
self._sort_buffer(buffer, lt)
min_element = buffer[-self._n]
threshold = self._key_fn(min_element) if self._key_fn else min_element
return threshold, buffer[-self._n:]
return accumulator
def merge_accumulators(self, accumulators, *args, **kwargs):
accumulators = list(accumulators)
if args or kwargs:
add_input = lambda accumulator, element: self.add_input(
accumulator, element, *args, **kwargs)
else:
add_input = self.add_input
total_accumulator = None
for accumulator in accumulators:
if total_accumulator is None:
total_accumulator = accumulator
else:
for element in accumulator[1]:
total_accumulator = add_input(total_accumulator, element)
return total_accumulator
def extract_output(self, accumulator, *args, **kwargs):
if args or kwargs:
lt = lambda a, b: self._compare(a, b, *args, **kwargs)
else:
lt = self._compare
_, buffer = accumulator
self._sort_buffer(buffer, lt)
return buffer[:-self._n-1:-1] # tail, reversed
class Largest(TopCombineFn):
def default_label(self):
return 'Largest(%s)' % self._n
class Smallest(TopCombineFn):
def __init__(self, n):
super(Smallest, self).__init__(n, reverse=True)
def default_label(self):
return 'Smallest(%s)' % self._n
[docs]class Sample(object):
"""Combiners for sampling n elements without replacement."""
# pylint: disable=no-self-argument
@staticmethod
@ptransform.ptransform_fn
def FixedSizeGlobally(pcoll, n):
return pcoll | core.CombineGlobally(SampleCombineFn(n))
@staticmethod
@ptransform.ptransform_fn
def FixedSizePerKey(pcoll, n):
return pcoll | core.CombinePerKey(SampleCombineFn(n))
@with_input_types(T)
@with_output_types(List[T])
class SampleCombineFn(core.CombineFn):
"""CombineFn for all Sample transforms."""
def __init__(self, n):
super(SampleCombineFn, self).__init__()
# Most of this combiner's work is done by a TopCombineFn. We could just
# subclass TopCombineFn to make this class, but since sampling is not
# really a kind of Top operation, we use a TopCombineFn instance as a
# helper instead.
self._top_combiner = TopCombineFn(n)
def create_accumulator(self):
return self._top_combiner.create_accumulator()
def add_input(self, heap, element):
# Before passing elements to the Top combiner, we pair them with random
# numbers. The elements with the n largest random number "keys" will be
# selected for the output.
return self._top_combiner.add_input(heap, (random.random(), element))
def merge_accumulators(self, heaps):
return self._top_combiner.merge_accumulators(heaps)
def extract_output(self, heap):
# Here we strip off the random number keys we added in add_input.
return [e for _, e in self._top_combiner.extract_output(heap)]
class _TupleCombineFnBase(core.CombineFn):
def __init__(self, *combiners):
self._combiners = [core.CombineFn.maybe_from_callable(c) for c in combiners]
self._named_combiners = combiners
def display_data(self):
combiners = [c.__name__ if hasattr(c, '__name__') else c.__class__.__name__
for c in self._named_combiners]
return {'combiners': str(combiners)}
def create_accumulator(self):
return [c.create_accumulator() for c in self._combiners]
def merge_accumulators(self, accumulators):
return [c.merge_accumulators(a)
for c, a in zip(self._combiners, zip(*accumulators))]
def extract_output(self, accumulator):
return tuple([c.extract_output(a)
for c, a in zip(self._combiners, accumulator)])
class TupleCombineFn(_TupleCombineFnBase):
"""A combiner for combining tuples via a tuple of combiners.
Takes as input a tuple of N CombineFns and combines N-tuples by
combining the k-th element of each tuple with the k-th CombineFn,
outputting a new N-tuple of combined values.
"""
def add_input(self, accumulator, element):
return [c.add_input(a, e)
for c, a, e in zip(self._combiners, accumulator, element)]
def with_common_input(self):
return SingleInputTupleCombineFn(*self._combiners)
class SingleInputTupleCombineFn(_TupleCombineFnBase):
"""A combiner for combining a single value via a tuple of combiners.
Takes as input a tuple of N CombineFns and combines elements by
applying each CombineFn to each input, producing an N-tuple of
the outputs corresponding to each of the N CombineFn's outputs.
"""
def add_input(self, accumulator, element):
return [c.add_input(a, element)
for c, a in zip(self._combiners, accumulator)]
[docs]class ToList(ptransform.PTransform):
"""A global CombineFn that condenses a PCollection into a single list."""
def __init__(self, label='ToList'): # pylint: disable=useless-super-delegation
super(ToList, self).__init__(label)
[docs] def expand(self, pcoll):
return pcoll | self.label >> core.CombineGlobally(ToListCombineFn())
@with_input_types(T)
@with_output_types(List[T])
class ToListCombineFn(core.CombineFn):
"""CombineFn for to_list."""
def create_accumulator(self):
return []
def add_input(self, accumulator, element):
accumulator.append(element)
return accumulator
def merge_accumulators(self, accumulators):
return sum(accumulators, [])
def extract_output(self, accumulator):
return accumulator
[docs]class ToDict(ptransform.PTransform):
"""A global CombineFn that condenses a PCollection into a single dict.
PCollections should consist of 2-tuples, notionally (key, value) pairs.
If multiple values are associated with the same key, only one of the values
will be present in the resulting dict.
"""
def __init__(self, label='ToDict'): # pylint: disable=useless-super-delegation
super(ToDict, self).__init__(label)
[docs] def expand(self, pcoll):
return pcoll | self.label >> core.CombineGlobally(ToDictCombineFn())
@with_input_types(Tuple[K, V])
@with_output_types(Dict[K, V])
class ToDictCombineFn(core.CombineFn):
"""CombineFn for to_dict."""
def create_accumulator(self):
return dict()
def add_input(self, accumulator, element):
key, value = element
accumulator[key] = value
return accumulator
def merge_accumulators(self, accumulators):
result = dict()
for a in accumulators:
result.update(a)
return result
def extract_output(self, accumulator):
return accumulator
def curry_combine_fn(fn, args, kwargs):
if not args and not kwargs:
return fn
# Create CurriedFn class for the combiner
class CurriedFn(core.CombineFn):
"""CombineFn that applies extra arguments."""
def create_accumulator(self):
return fn.create_accumulator(*args, **kwargs)
def add_input(self, accumulator, element):
return fn.add_input(accumulator, element, *args, **kwargs)
def merge_accumulators(self, accumulators):
return fn.merge_accumulators(accumulators, *args, **kwargs)
def extract_output(self, accumulator):
return fn.extract_output(accumulator, *args, **kwargs)
def apply(self, elements):
return fn.apply(elements, *args, **kwargs)
return CurriedFn()
class PhasedCombineFnExecutor(object):
"""Executor for phases of combine operations."""
def __init__(self, phase, fn, args, kwargs):
self.combine_fn = curry_combine_fn(fn, args, kwargs)
if phase == 'all':
self.apply = self.full_combine
elif phase == 'add':
self.apply = self.add_only
elif phase == 'merge':
self.apply = self.merge_only
elif phase == 'extract':
self.apply = self.extract_only
else:
raise ValueError('Unexpected phase: %s' % phase)
def full_combine(self, elements): # pylint: disable=invalid-name
return self.combine_fn.apply(elements)
def add_only(self, elements): # pylint: disable=invalid-name
return self.combine_fn.add_inputs(
self.combine_fn.create_accumulator(), elements)
def merge_only(self, accumulators): # pylint: disable=invalid-name
return self.combine_fn.merge_accumulators(accumulators)
def extract_only(self, accumulator): # pylint: disable=invalid-name
return self.combine_fn.extract_output(accumulator)