Source code for apache_beam.runners.dataflow.dataflow_runner

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"""A runner implementation that submits a job for remote execution.

The runner will create a JSON description of the job graph and then submit it
to the Dataflow Service for remote execution by a worker.
"""
from __future__ import absolute_import
from __future__ import division

import logging
import threading
import time
import traceback
from builtins import hex
from collections import defaultdict

from future.moves.urllib.parse import quote
from future.moves.urllib.parse import unquote
from future.utils import iteritems

import apache_beam as beam
from apache_beam import coders
from apache_beam import error
from apache_beam import pvalue
from apache_beam.internal import pickler
from apache_beam.internal.gcp import json_value
from apache_beam.options.pipeline_options import SetupOptions
from apache_beam.options.pipeline_options import StandardOptions
from apache_beam.options.pipeline_options import TestOptions
from apache_beam.portability import common_urns
from apache_beam.pvalue import AsSideInput
from apache_beam.runners.dataflow.internal import names
from apache_beam.runners.dataflow.internal.clients import dataflow as dataflow_api
from apache_beam.runners.dataflow.internal.names import PropertyNames
from apache_beam.runners.dataflow.internal.names import TransformNames
from apache_beam.runners.runner import PipelineResult
from apache_beam.runners.runner import PipelineRunner
from apache_beam.runners.runner import PipelineState
from apache_beam.runners.runner import PValueCache
from apache_beam.transforms.display import DisplayData
from apache_beam.typehints import typehints
from apache_beam.utils import proto_utils
from apache_beam.utils.plugin import BeamPlugin

__all__ = ['DataflowRunner']


[docs]class DataflowRunner(PipelineRunner): """A runner that creates job graphs and submits them for remote execution. Every execution of the run() method will submit an independent job for remote execution that consists of the nodes reachable from the passed in node argument or entire graph if node is None. The run() method returns after the service created the job and will not wait for the job to finish if blocking is set to False. """ # A list of PTransformOverride objects to be applied before running a pipeline # using DataflowRunner. # Currently this only works for overrides where the input and output types do # not change. # For internal SDK use only. This should not be updated by Beam pipeline # authors. # Imported here to avoid circular dependencies. # TODO: Remove the apache_beam.pipeline dependency in CreatePTransformOverride from apache_beam.runners.dataflow.ptransform_overrides import CreatePTransformOverride _PTRANSFORM_OVERRIDES = [ CreatePTransformOverride(), ] def __init__(self, cache=None): # Cache of CloudWorkflowStep protos generated while the runner # "executes" a pipeline. self._cache = cache if cache is not None else PValueCache() self._unique_step_id = 0 def _get_unique_step_name(self): self._unique_step_id += 1 return 's%s' % self._unique_step_id
[docs] @staticmethod def poll_for_job_completion(runner, result, duration): """Polls for the specified job to finish running (successfully or not). Updates the result with the new job information before returning. Args: runner: DataflowRunner instance to use for polling job state. result: DataflowPipelineResult instance used for job information. duration (int): The time to wait (in milliseconds) for job to finish. If it is set to :data:`None`, it will wait indefinitely until the job is finished. """ last_message_time = None current_seen_messages = set() last_error_rank = float('-inf') last_error_msg = None last_job_state = None # How long to wait after pipeline failure for the error # message to show up giving the reason for the failure. # It typically takes about 30 seconds. final_countdown_timer_secs = 50.0 sleep_secs = 5.0 # Try to prioritize the user-level traceback, if any. def rank_error(msg): if 'work item was attempted' in msg: return -1 elif 'Traceback' in msg: return 1 return 0 if duration: start_secs = time.time() duration_secs = duration // 1000 job_id = result.job_id() while True: response = runner.dataflow_client.get_job(job_id) # If get() is called very soon after Create() the response may not contain # an initialized 'currentState' field. if response.currentState is not None: if response.currentState != last_job_state: logging.info('Job %s is in state %s', job_id, response.currentState) last_job_state = response.currentState if str(response.currentState) != 'JOB_STATE_RUNNING': # Stop checking for new messages on timeout, explanatory # message received, success, or a terminal job state caused # by the user that therefore doesn't require explanation. if (final_countdown_timer_secs <= 0.0 or last_error_msg is not None or str(response.currentState) == 'JOB_STATE_DONE' or str(response.currentState) == 'JOB_STATE_CANCELLED' or str(response.currentState) == 'JOB_STATE_UPDATED' or str(response.currentState) == 'JOB_STATE_DRAINED'): break # The job has failed; ensure we see any final error messages. sleep_secs = 1.0 # poll faster during the final countdown final_countdown_timer_secs -= sleep_secs time.sleep(sleep_secs) # Get all messages since beginning of the job run or since last message. page_token = None while True: messages, page_token = runner.dataflow_client.list_messages( job_id, page_token=page_token, start_time=last_message_time) for m in messages: message = '%s: %s: %s' % (m.time, m.messageImportance, m.messageText) if m.time > last_message_time: last_message_time = m.time current_seen_messages = set() if message in current_seen_messages: # Skip the message if it has already been seen at the current # time. This could be the case since the list_messages API is # queried starting at last_message_time. continue else: current_seen_messages.add(message) # Skip empty messages. if m.messageImportance is None: continue logging.info(message) if str(m.messageImportance) == 'JOB_MESSAGE_ERROR': if rank_error(m.messageText) >= last_error_rank: last_error_rank = rank_error(m.messageText) last_error_msg = m.messageText if not page_token: break if duration: passed_secs = time.time() - start_secs if passed_secs > duration_secs: logging.warning('Timing out on waiting for job %s after %d seconds', job_id, passed_secs) break result._job = response runner.last_error_msg = last_error_msg
[docs] @staticmethod def group_by_key_input_visitor(): # Imported here to avoid circular dependencies. from apache_beam.pipeline import PipelineVisitor class GroupByKeyInputVisitor(PipelineVisitor): """A visitor that replaces `Any` element type for input `PCollection` of a `GroupByKey` or `_GroupByKeyOnly` with a `KV` type. TODO(BEAM-115): Once Python SDk is compatible with the new Runner API, we could directly replace the coder instead of mutating the element type. """ def enter_composite_transform(self, transform_node): self.visit_transform(transform_node) def visit_transform(self, transform_node): # Imported here to avoid circular dependencies. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.transforms.core import GroupByKey, _GroupByKeyOnly if isinstance(transform_node.transform, (GroupByKey, _GroupByKeyOnly)): pcoll = transform_node.inputs[0] pcoll.element_type = typehints.coerce_to_kv_type( pcoll.element_type, transform_node.full_label) key_type, value_type = pcoll.element_type.tuple_types if transform_node.outputs: transform_node.outputs[None].element_type = typehints.KV[ key_type, typehints.Iterable[value_type]] return GroupByKeyInputVisitor()
[docs] @staticmethod def side_input_visitor(): # Imported here to avoid circular dependencies. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.pipeline import PipelineVisitor from apache_beam.transforms.core import ParDo class SideInputVisitor(PipelineVisitor): """Ensures input `PCollection` used as a side inputs has a `KV` type. TODO(BEAM-115): Once Python SDK is compatible with the new Runner API, we could directly replace the coder instead of mutating the element type. """ def visit_transform(self, transform_node): if isinstance(transform_node.transform, ParDo): new_side_inputs = [] for ix, side_input in enumerate(transform_node.side_inputs): access_pattern = side_input._side_input_data().access_pattern if access_pattern == common_urns.side_inputs.ITERABLE.urn: # Add a map to ('', value) as Dataflow currently only handles # keyed side inputs. pipeline = side_input.pvalue.pipeline new_side_input = _DataflowIterableSideInput(side_input) new_side_input.pvalue = beam.pvalue.PCollection( pipeline, element_type=typehints.KV[ str, side_input.pvalue.element_type]) parent = transform_node.parent or pipeline._root_transform() map_to_void_key = beam.pipeline.AppliedPTransform( pipeline, beam.Map(lambda x: ('', x)), transform_node.full_label + '/MapToVoidKey%s' % ix, (side_input.pvalue,)) new_side_input.pvalue.producer = map_to_void_key map_to_void_key.add_output(new_side_input.pvalue) parent.add_part(map_to_void_key) elif access_pattern == common_urns.side_inputs.MULTIMAP.urn: # Ensure the input coder is a KV coder and patch up the # access pattern to appease Dataflow. side_input.pvalue.element_type = typehints.coerce_to_kv_type( side_input.pvalue.element_type, transform_node.full_label) new_side_input = _DataflowMultimapSideInput(side_input) else: raise ValueError( 'Unsupported access pattern for %r: %r' % (transform_node.full_label, access_pattern)) new_side_inputs.append(new_side_input) transform_node.side_inputs = new_side_inputs transform_node.transform.side_inputs = new_side_inputs return SideInputVisitor()
[docs] @staticmethod def flatten_input_visitor(): # Imported here to avoid circular dependencies. from apache_beam.pipeline import PipelineVisitor class FlattenInputVisitor(PipelineVisitor): """A visitor that replaces the element type for input ``PCollections``s of a ``Flatten`` transform with that of the output ``PCollection``. """ def visit_transform(self, transform_node): # Imported here to avoid circular dependencies. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam import Flatten if isinstance(transform_node.transform, Flatten): output_pcoll = transform_node.outputs[None] for input_pcoll in transform_node.inputs: input_pcoll.element_type = output_pcoll.element_type return FlattenInputVisitor()
[docs] def run_pipeline(self, pipeline): """Remotely executes entire pipeline or parts reachable from node.""" # Import here to avoid adding the dependency for local running scenarios. try: # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.runners.dataflow.internal import apiclient except ImportError: raise ImportError( 'Google Cloud Dataflow runner not available, ' 'please install apache_beam[gcp]') # Convert all side inputs into a form acceptable to Dataflow. if apiclient._use_fnapi(pipeline._options): pipeline.visit(self.side_input_visitor()) # Performing configured PTransform overrides. Note that this is currently # done before Runner API serialization, since the new proto needs to contain # any added PTransforms. pipeline.replace_all(DataflowRunner._PTRANSFORM_OVERRIDES) # Snapshot the pipeline in a portable proto. self.proto_pipeline, self.proto_context = pipeline.to_runner_api( return_context=True) # TODO(BEAM-2717): Remove once Coders are already in proto. for pcoll in self.proto_pipeline.components.pcollections.values(): if pcoll.coder_id not in self.proto_context.coders: coder = coders.registry.get_coder(pickler.loads(pcoll.coder_id)) pcoll.coder_id = self.proto_context.coders.get_id(coder) self.proto_context.coders.populate_map( self.proto_pipeline.components.coders) # Add setup_options for all the BeamPlugin imports setup_options = pipeline._options.view_as(SetupOptions) plugins = BeamPlugin.get_all_plugin_paths() if setup_options.beam_plugins is not None: plugins = list(set(plugins + setup_options.beam_plugins)) setup_options.beam_plugins = plugins self.job = apiclient.Job(pipeline._options, self.proto_pipeline) # Dataflow runner requires a KV type for GBK inputs, hence we enforce that # here. pipeline.visit(self.group_by_key_input_visitor()) # Dataflow runner requires output type of the Flatten to be the same as the # inputs, hence we enforce that here. pipeline.visit(self.flatten_input_visitor()) # The superclass's run will trigger a traversal of all reachable nodes. super(DataflowRunner, self).run_pipeline(pipeline) test_options = pipeline._options.view_as(TestOptions) # If it is a dry run, return without submitting the job. if test_options.dry_run: return None # Get a Dataflow API client and set its options self.dataflow_client = apiclient.DataflowApplicationClient( pipeline._options) # Create the job description and send a request to the service. The result # can be None if there is no need to send a request to the service (e.g. # template creation). If a request was sent and failed then the call will # raise an exception. result = DataflowPipelineResult( self.dataflow_client.create_job(self.job), self) # TODO(BEAM-4274): Circular import runners-metrics. Requires refactoring. from apache_beam.runners.dataflow.dataflow_metrics import DataflowMetrics self._metrics = DataflowMetrics(self.dataflow_client, result, self.job) result.metric_results = self._metrics return result
def _get_typehint_based_encoding(self, typehint, window_coder): """Returns an encoding based on a typehint object.""" return self._get_cloud_encoding(self._get_coder(typehint, window_coder=window_coder)) @staticmethod def _get_coder(typehint, window_coder): """Returns a coder based on a typehint object.""" if window_coder: return coders.WindowedValueCoder( coders.registry.get_coder(typehint), window_coder=window_coder) return coders.registry.get_coder(typehint) def _get_cloud_encoding(self, coder): """Returns an encoding based on a coder object.""" if not isinstance(coder, coders.Coder): raise TypeError('Coder object must inherit from coders.Coder: %s.' % str(coder)) return coder.as_cloud_object() def _get_side_input_encoding(self, input_encoding): """Returns an encoding for the output of a view transform. Args: input_encoding: encoding of current transform's input. Side inputs need this because the service will check that input and output types match. Returns: An encoding that matches the output and input encoding. This is essential for the View transforms introduced to produce side inputs to a ParDo. """ return { '@type': 'kind:stream', 'component_encodings': [input_encoding], 'is_stream_like': { 'value': True }, } def _get_encoded_output_coder(self, transform_node, window_value=True): """Returns the cloud encoding of the coder for the output of a transform.""" if (len(transform_node.outputs) == 1 and transform_node.outputs[None].element_type is not None): # TODO(robertwb): Handle type hints for multi-output transforms. element_type = transform_node.outputs[None].element_type else: # TODO(silviuc): Remove this branch (and assert) when typehints are # propagated everywhere. Returning an 'Any' as type hint will trigger # usage of the fallback coder (i.e., cPickler). element_type = typehints.Any if window_value: window_coder = ( transform_node.outputs[None].windowing.windowfn.get_window_coder()) else: window_coder = None return self._get_typehint_based_encoding( element_type, window_coder=window_coder) def _add_step(self, step_kind, step_label, transform_node, side_tags=()): """Creates a Step object and adds it to the cache.""" # Import here to avoid adding the dependency for local running scenarios. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.runners.dataflow.internal import apiclient step = apiclient.Step(step_kind, self._get_unique_step_name()) self.job.proto.steps.append(step.proto) step.add_property(PropertyNames.USER_NAME, step_label) # Cache the node/step association for the main output of the transform node. self._cache.cache_output(transform_node, None, step) # If side_tags is not () then this is a multi-output transform node and we # need to cache the (node, tag, step) for each of the tags used to access # the outputs. This is essential because the keys used to search in the # cache always contain the tag. for tag in side_tags: self._cache.cache_output(transform_node, tag, step) # Finally, we add the display data items to the pipeline step. # If the transform contains no display data then an empty list is added. step.add_property( PropertyNames.DISPLAY_DATA, [item.get_dict() for item in DisplayData.create_from(transform_node.transform).items]) return step def _add_singleton_step( self, label, full_label, tag, input_step, windowing_strategy): """Creates a CollectionToSingleton step used to handle ParDo side inputs.""" # Import here to avoid adding the dependency for local running scenarios. from apache_beam.runners.dataflow.internal import apiclient step = apiclient.Step(TransformNames.COLLECTION_TO_SINGLETON, label) self.job.proto.steps.append(step.proto) step.add_property(PropertyNames.USER_NAME, full_label) step.add_property( PropertyNames.PARALLEL_INPUT, {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(tag)}) step.encoding = self._get_side_input_encoding(input_step.encoding) step.add_property( PropertyNames.OUTPUT_INFO, [{PropertyNames.USER_NAME: ( '%s.%s' % (full_label, PropertyNames.OUTPUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}]) step.add_property( PropertyNames.WINDOWING_STRATEGY, self.serialize_windowing_strategy(windowing_strategy)) return step
[docs] def run_Impulse(self, transform_node): standard_options = ( transform_node.outputs[None].pipeline._options.view_as(StandardOptions)) if standard_options.streaming: step = self._add_step( TransformNames.READ, transform_node.full_label, transform_node) step.add_property(PropertyNames.FORMAT, 'pubsub') step.add_property(PropertyNames.PUBSUB_SUBSCRIPTION, '_starting_signal/') step.encoding = self._get_encoded_output_coder(transform_node) step.add_property( PropertyNames.OUTPUT_INFO, [{PropertyNames.USER_NAME: ( '%s.%s' % ( transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}]) else: ValueError('Impulse source for batch pipelines has not been defined.')
[docs] def run_Flatten(self, transform_node): step = self._add_step(TransformNames.FLATTEN, transform_node.full_label, transform_node) inputs = [] for one_input in transform_node.inputs: input_step = self._cache.get_pvalue(one_input) inputs.append( {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(one_input.tag)}) step.add_property(PropertyNames.INPUTS, inputs) step.encoding = self._get_encoded_output_coder(transform_node) step.add_property( PropertyNames.OUTPUT_INFO, [{PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}])
[docs] def apply_WriteToBigQuery(self, transform, pcoll): # Make sure this is the WriteToBigQuery class that we expected if not isinstance(transform, beam.io.WriteToBigQuery): return self.apply_PTransform(transform, pcoll) standard_options = pcoll.pipeline._options.view_as(StandardOptions) if standard_options.streaming: if (transform.write_disposition == beam.io.BigQueryDisposition.WRITE_TRUNCATE): raise RuntimeError('Can not use write truncation mode in streaming') return self.apply_PTransform(transform, pcoll) else: return pcoll | 'WriteToBigQuery' >> beam.io.Write( beam.io.BigQuerySink( transform.table_reference.tableId, transform.table_reference.datasetId, transform.table_reference.projectId, transform.schema, transform.create_disposition, transform.write_disposition))
[docs] def apply_GroupByKey(self, transform, pcoll): # Infer coder of parent. # # TODO(ccy): make Coder inference and checking less specialized and more # comprehensive. parent = pcoll.producer if parent: coder = parent.transform._infer_output_coder() # pylint: disable=protected-access if not coder: coder = self._get_coder(pcoll.element_type or typehints.Any, None) if not coder.is_kv_coder(): raise ValueError(('Coder for the GroupByKey operation "%s" is not a ' 'key-value coder: %s.') % (transform.label, coder)) # TODO(robertwb): Update the coder itself if it changed. coders.registry.verify_deterministic( coder.key_coder(), 'GroupByKey operation "%s"' % transform.label) return pvalue.PCollection(pcoll.pipeline)
[docs] def run_GroupByKey(self, transform_node): input_tag = transform_node.inputs[0].tag input_step = self._cache.get_pvalue(transform_node.inputs[0]) step = self._add_step( TransformNames.GROUP, transform_node.full_label, transform_node) step.add_property( PropertyNames.PARALLEL_INPUT, {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(input_tag)}) step.encoding = self._get_encoded_output_coder(transform_node) step.add_property( PropertyNames.OUTPUT_INFO, [{PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}]) windowing = transform_node.transform.get_windowing( transform_node.inputs) step.add_property( PropertyNames.SERIALIZED_FN, self.serialize_windowing_strategy(windowing))
[docs] def run_ParDo(self, transform_node): transform = transform_node.transform input_tag = transform_node.inputs[0].tag input_step = self._cache.get_pvalue(transform_node.inputs[0]) # Attach side inputs. si_dict = {} si_labels = {} full_label_counts = defaultdict(int) lookup_label = lambda side_pval: si_labels[side_pval] named_inputs = transform_node.named_inputs() label_renames = {} for ix, side_pval in enumerate(transform_node.side_inputs): assert isinstance(side_pval, AsSideInput) step_name = 'SideInput-' + self._get_unique_step_name() si_label = 'side%d-%s' % (ix, transform_node.full_label) old_label = 'side%d' % ix label_renames[old_label] = si_label assert old_label in named_inputs pcollection_label = '%s.%s' % ( side_pval.pvalue.producer.full_label.split('/')[-1], side_pval.pvalue.tag if side_pval.pvalue.tag else 'out') si_full_label = '%s/%s(%s.%s)' % (transform_node.full_label, side_pval.__class__.__name__, pcollection_label, full_label_counts[pcollection_label]) # Count the number of times the same PCollection is a side input # to the same ParDo. full_label_counts[pcollection_label] += 1 self._add_singleton_step( step_name, si_full_label, side_pval.pvalue.tag, self._cache.get_pvalue(side_pval.pvalue), side_pval.pvalue.windowing) si_dict[si_label] = { '@type': 'OutputReference', PropertyNames.STEP_NAME: step_name, PropertyNames.OUTPUT_NAME: PropertyNames.OUT} si_labels[side_pval] = si_label # Now create the step for the ParDo transform being handled. transform_name = transform_node.full_label.rsplit('/', 1)[-1] step = self._add_step( TransformNames.DO, transform_node.full_label + ( '/{}'.format(transform_name) if transform_node.side_inputs else ''), transform_node, transform_node.transform.output_tags) # Import here to avoid adding the dependency for local running scenarios. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.runners.dataflow.internal import apiclient transform_proto = self.proto_context.transforms.get_proto(transform_node) transform_id = self.proto_context.transforms.get_id(transform_node) if (apiclient._use_fnapi(transform_node.inputs[0].pipeline._options) and transform_proto.spec.urn == common_urns.primitives.PAR_DO.urn): # Patch side input ids to be unique across a given pipeline. if (label_renames and transform_proto.spec.urn == common_urns.primitives.PAR_DO.urn): # Patch PTransform proto. for old, new in iteritems(label_renames): transform_proto.inputs[new] = transform_proto.inputs[old] del transform_proto.inputs[old] # Patch ParDo proto. proto_type, _ = beam.PTransform._known_urns[transform_proto.spec.urn] proto = proto_utils.parse_Bytes(transform_proto.spec.payload, proto_type) for old, new in iteritems(label_renames): proto.side_inputs[new].CopyFrom(proto.side_inputs[old]) del proto.side_inputs[old] transform_proto.spec.payload = proto.SerializeToString() # We need to update the pipeline proto. del self.proto_pipeline.components.transforms[transform_id] (self.proto_pipeline.components.transforms[transform_id] .CopyFrom(transform_proto)) serialized_data = transform_id else: serialized_data = pickler.dumps( self._pardo_fn_data(transform_node, lookup_label)) step.add_property(PropertyNames.SERIALIZED_FN, serialized_data) step.add_property( PropertyNames.PARALLEL_INPUT, {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(input_tag)}) # Add side inputs if any. step.add_property(PropertyNames.NON_PARALLEL_INPUTS, si_dict) # Generate description for the outputs. The output names # will be 'out' for main output and 'out_<tag>' for a tagged output. # Using 'out' as a tag will not clash with the name for main since it will # be transformed into 'out_out' internally. outputs = [] step.encoding = self._get_encoded_output_coder(transform_node) # Add the main output to the description. outputs.append( {PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}) for side_tag in transform.output_tags: # The assumption here is that all outputs will have the same typehint # and coder as the main output. This is certainly the case right now # but conceivably it could change in the future. outputs.append( {PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, side_tag)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: ( '%s_%s' % (PropertyNames.OUT, side_tag))}) step.add_property(PropertyNames.OUTPUT_INFO, outputs)
@staticmethod def _pardo_fn_data(transform_node, get_label): transform = transform_node.transform si_tags_and_types = [ # pylint: disable=protected-access (get_label(side_pval), side_pval.__class__, side_pval._view_options()) for side_pval in transform_node.side_inputs] return (transform.fn, transform.args, transform.kwargs, si_tags_and_types, transform_node.inputs[0].windowing)
[docs] def apply_CombineValues(self, transform, pcoll): return pvalue.PCollection(pcoll.pipeline)
[docs] def run_CombineValues(self, transform_node): transform = transform_node.transform input_tag = transform_node.inputs[0].tag input_step = self._cache.get_pvalue(transform_node.inputs[0]) step = self._add_step( TransformNames.COMBINE, transform_node.full_label, transform_node) # The data transmitted in SERIALIZED_FN is different depending on whether # this is a fnapi pipeline or not. from apache_beam.runners.dataflow.internal import apiclient if apiclient._use_fnapi(transform_node.inputs[0].pipeline._options): # Fnapi pipelines send the transform ID of the CombineValues transform's # parent composite because Dataflow expects the ID of a CombinePerKey # transform. serialized_data = self.proto_context.transforms.get_id( transform_node.parent) else: # Combiner functions do not take deferred side-inputs (i.e. PValues) and # therefore the code to handle extra args/kwargs is simpler than for the # DoFn's of the ParDo transform. In the last, empty argument is where # side inputs information would go. serialized_data = pickler.dumps((transform.fn, transform.args, transform.kwargs, ())) step.add_property(PropertyNames.SERIALIZED_FN, serialized_data) step.add_property( PropertyNames.PARALLEL_INPUT, {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(input_tag)}) # Note that the accumulator must not have a WindowedValue encoding, while # the output of this step does in fact have a WindowedValue encoding. accumulator_encoding = self._get_cloud_encoding( transform_node.transform.fn.get_accumulator_coder()) output_encoding = self._get_encoded_output_coder(transform_node) step.encoding = output_encoding step.add_property(PropertyNames.ENCODING, accumulator_encoding) # Generate description for main output 'out.' outputs = [] # Add the main output to the description. outputs.append( {PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}) step.add_property(PropertyNames.OUTPUT_INFO, outputs)
[docs] def apply_Read(self, unused_transform, pbegin): # Always consider Read to be a primitive for dataflow. return beam.pvalue.PCollection(pbegin.pipeline)
[docs] def run_Read(self, transform_node): transform = transform_node.transform step = self._add_step( TransformNames.READ, transform_node.full_label, transform_node) # TODO(mairbek): refactor if-else tree to use registerable functions. # Initialize the source specific properties. standard_options = transform_node.inputs[0].pipeline.options.view_as( StandardOptions) if not hasattr(transform.source, 'format'): # If a format is not set, we assume the source to be a custom source. source_dict = {} source_dict['spec'] = { '@type': names.SOURCE_TYPE, names.SERIALIZED_SOURCE_KEY: pickler.dumps(transform.source) } try: source_dict['metadata'] = { 'estimated_size_bytes': json_value.get_typed_value_descriptor( transform.source.estimate_size()) } except error.RuntimeValueProviderError: # Size estimation is best effort, and this error is by value provider. logging.info( 'Could not estimate size of source %r due to ' + \ 'RuntimeValueProviderError', transform.source) except Exception: # pylint: disable=broad-except # Size estimation is best effort. So we log the error and continue. logging.info( 'Could not estimate size of source %r due to an exception: %s', transform.source, traceback.format_exc()) step.add_property(PropertyNames.SOURCE_STEP_INPUT, source_dict) elif transform.source.format == 'text': step.add_property(PropertyNames.FILE_PATTERN, transform.source.path) elif transform.source.format == 'bigquery': if standard_options.streaming: raise ValueError('BigQuery source is not currently available for use ' 'in streaming pipelines.') step.add_property(PropertyNames.BIGQUERY_EXPORT_FORMAT, 'FORMAT_AVRO') # TODO(silviuc): Add table validation if transform.source.validate. if transform.source.table_reference is not None: step.add_property(PropertyNames.BIGQUERY_DATASET, transform.source.table_reference.datasetId) step.add_property(PropertyNames.BIGQUERY_TABLE, transform.source.table_reference.tableId) # If project owning the table was not specified then the project owning # the workflow (current project) will be used. if transform.source.table_reference.projectId is not None: step.add_property(PropertyNames.BIGQUERY_PROJECT, transform.source.table_reference.projectId) elif transform.source.query is not None: step.add_property(PropertyNames.BIGQUERY_QUERY, transform.source.query) step.add_property(PropertyNames.BIGQUERY_USE_LEGACY_SQL, transform.source.use_legacy_sql) step.add_property(PropertyNames.BIGQUERY_FLATTEN_RESULTS, transform.source.flatten_results) else: raise ValueError('BigQuery source %r must specify either a table or' ' a query' % transform.source) elif transform.source.format == 'pubsub': if not standard_options.streaming: raise ValueError('Cloud Pub/Sub is currently available for use ' 'only in streaming pipelines.') # Only one of topic or subscription should be set. if transform.source.full_subscription: step.add_property(PropertyNames.PUBSUB_SUBSCRIPTION, transform.source.full_subscription) elif transform.source.full_topic: step.add_property(PropertyNames.PUBSUB_TOPIC, transform.source.full_topic) if transform.source.id_label: step.add_property(PropertyNames.PUBSUB_ID_LABEL, transform.source.id_label) if transform.source.with_attributes: # Setting this property signals Dataflow runner to return full # PubsubMessages instead of just the data part of the payload. step.add_property(PropertyNames.PUBSUB_SERIALIZED_ATTRIBUTES_FN, '') if transform.source.timestamp_attribute is not None: step.add_property(PropertyNames.PUBSUB_TIMESTAMP_ATTRIBUTE, transform.source.timestamp_attribute) else: raise ValueError( 'Source %r has unexpected format %s.' % ( transform.source, transform.source.format)) if not hasattr(transform.source, 'format'): step.add_property(PropertyNames.FORMAT, names.SOURCE_FORMAT) else: step.add_property(PropertyNames.FORMAT, transform.source.format) # Wrap coder in WindowedValueCoder: this is necessary as the encoding of a # step should be the type of value outputted by each step. Read steps # automatically wrap output values in a WindowedValue wrapper, if necessary. # This is also necessary for proper encoding for size estimation. # Using a GlobalWindowCoder as a place holder instead of the default # PickleCoder because GlobalWindowCoder is known coder. # TODO(robertwb): Query the collection for the windowfn to extract the # correct coder. coder = coders.WindowedValueCoder( coders.registry.get_coder(transform_node.outputs[None].element_type), coders.coders.GlobalWindowCoder()) step.encoding = self._get_cloud_encoding(coder) step.add_property( PropertyNames.OUTPUT_INFO, [{PropertyNames.USER_NAME: ( '%s.%s' % (transform_node.full_label, PropertyNames.OUT)), PropertyNames.ENCODING: step.encoding, PropertyNames.OUTPUT_NAME: PropertyNames.OUT}])
[docs] def run__NativeWrite(self, transform_node): transform = transform_node.transform input_tag = transform_node.inputs[0].tag input_step = self._cache.get_pvalue(transform_node.inputs[0]) step = self._add_step( TransformNames.WRITE, transform_node.full_label, transform_node) # TODO(mairbek): refactor if-else tree to use registerable functions. # Initialize the sink specific properties. if transform.sink.format == 'text': # Note that it is important to use typed properties (@type/value dicts) # for non-string properties and also for empty strings. For example, # in the code below the num_shards must have type and also # file_name_suffix and shard_name_template (could be empty strings). step.add_property( PropertyNames.FILE_NAME_PREFIX, transform.sink.file_name_prefix, with_type=True) step.add_property( PropertyNames.FILE_NAME_SUFFIX, transform.sink.file_name_suffix, with_type=True) step.add_property( PropertyNames.SHARD_NAME_TEMPLATE, transform.sink.shard_name_template, with_type=True) if transform.sink.num_shards > 0: step.add_property( PropertyNames.NUM_SHARDS, transform.sink.num_shards, with_type=True) # TODO(silviuc): Implement sink validation. step.add_property(PropertyNames.VALIDATE_SINK, False, with_type=True) elif transform.sink.format == 'bigquery': # TODO(silviuc): Add table validation if transform.sink.validate. step.add_property(PropertyNames.BIGQUERY_DATASET, transform.sink.table_reference.datasetId) step.add_property(PropertyNames.BIGQUERY_TABLE, transform.sink.table_reference.tableId) # If project owning the table was not specified then the project owning # the workflow (current project) will be used. if transform.sink.table_reference.projectId is not None: step.add_property(PropertyNames.BIGQUERY_PROJECT, transform.sink.table_reference.projectId) step.add_property(PropertyNames.BIGQUERY_CREATE_DISPOSITION, transform.sink.create_disposition) step.add_property(PropertyNames.BIGQUERY_WRITE_DISPOSITION, transform.sink.write_disposition) if transform.sink.table_schema is not None: step.add_property( PropertyNames.BIGQUERY_SCHEMA, transform.sink.schema_as_json()) elif transform.sink.format == 'pubsub': standard_options = ( transform_node.inputs[0].pipeline.options.view_as(StandardOptions)) if not standard_options.streaming: raise ValueError('Cloud Pub/Sub is currently available for use ' 'only in streaming pipelines.') step.add_property(PropertyNames.PUBSUB_TOPIC, transform.sink.full_topic) if transform.sink.id_label: step.add_property(PropertyNames.PUBSUB_ID_LABEL, transform.sink.id_label) if transform.sink.with_attributes: # Setting this property signals Dataflow runner that the PCollection # contains PubsubMessage objects instead of just raw data. step.add_property(PropertyNames.PUBSUB_SERIALIZED_ATTRIBUTES_FN, '') if transform.sink.timestamp_attribute is not None: step.add_property(PropertyNames.PUBSUB_TIMESTAMP_ATTRIBUTE, transform.sink.timestamp_attribute) else: raise ValueError( 'Sink %r has unexpected format %s.' % ( transform.sink, transform.sink.format)) step.add_property(PropertyNames.FORMAT, transform.sink.format) # Wrap coder in WindowedValueCoder: this is necessary for proper encoding # for size estimation. Using a GlobalWindowCoder as a place holder instead # of the default PickleCoder because GlobalWindowCoder is known coder. # TODO(robertwb): Query the collection for the windowfn to extract the # correct coder. coder = coders.WindowedValueCoder(transform.sink.coder, coders.coders.GlobalWindowCoder()) step.encoding = self._get_cloud_encoding(coder) step.add_property(PropertyNames.ENCODING, step.encoding) step.add_property( PropertyNames.PARALLEL_INPUT, {'@type': 'OutputReference', PropertyNames.STEP_NAME: input_step.proto.name, PropertyNames.OUTPUT_NAME: input_step.get_output(input_tag)})
[docs] @classmethod def serialize_windowing_strategy(cls, windowing): from apache_beam.runners import pipeline_context from apache_beam.portability.api import beam_runner_api_pb2 context = pipeline_context.PipelineContext() windowing_proto = windowing.to_runner_api(context) return cls.byte_array_to_json_string( beam_runner_api_pb2.MessageWithComponents( components=context.to_runner_api(), windowing_strategy=windowing_proto).SerializeToString())
[docs] @classmethod def deserialize_windowing_strategy(cls, serialized_data): # Imported here to avoid circular dependencies. # pylint: disable=wrong-import-order, wrong-import-position from apache_beam.runners import pipeline_context from apache_beam.portability.api import beam_runner_api_pb2 from apache_beam.transforms.core import Windowing proto = beam_runner_api_pb2.MessageWithComponents() proto.ParseFromString(cls.json_string_to_byte_array(serialized_data)) return Windowing.from_runner_api( proto.windowing_strategy, pipeline_context.PipelineContext(proto.components))
[docs] @staticmethod def byte_array_to_json_string(raw_bytes): """Implements org.apache.beam.sdk.util.StringUtils.byteArrayToJsonString.""" return quote(raw_bytes)
[docs] @staticmethod def json_string_to_byte_array(encoded_string): """Implements org.apache.beam.sdk.util.StringUtils.jsonStringToByteArray.""" return unquote(encoded_string)
class _DataflowSideInput(beam.pvalue.AsSideInput): """Wraps a side input as a dataflow-compatible side input.""" # Dataflow does not yet accept the shared urn definition for access. DATAFLOW_MULTIMAP_URN = 'urn:beam:sideinput:materialization:multimap:0.1' def _view_options(self): return { 'data': self._data, } def _side_input_data(self): return self._data class _DataflowIterableSideInput(_DataflowSideInput): """Wraps an iterable side input as dataflow-compatible side input.""" def __init__(self, iterable_side_input): # pylint: disable=protected-access side_input_data = iterable_side_input._side_input_data() assert ( side_input_data.access_pattern == common_urns.side_inputs.ITERABLE.urn) iterable_view_fn = side_input_data.view_fn self._data = beam.pvalue.SideInputData( self.DATAFLOW_MULTIMAP_URN, side_input_data.window_mapping_fn, lambda multimap: iterable_view_fn(multimap[''])) class _DataflowMultimapSideInput(_DataflowSideInput): """Wraps a multimap side input as dataflow-compatible side input.""" def __init__(self, side_input): # pylint: disable=protected-access self.pvalue = side_input.pvalue side_input_data = side_input._side_input_data() assert ( side_input_data.access_pattern == common_urns.side_inputs.MULTIMAP.urn) self._data = beam.pvalue.SideInputData( self.DATAFLOW_MULTIMAP_URN, side_input_data.window_mapping_fn, side_input_data.view_fn) class DataflowPipelineResult(PipelineResult): """Represents the state of a pipeline run on the Dataflow service.""" def __init__(self, job, runner): """Initialize a new DataflowPipelineResult instance. Args: job: Job message from the Dataflow API. Could be :data:`None` if a job request was not sent to Dataflow service (e.g. template jobs). runner: DataflowRunner instance. """ self._job = job self._runner = runner self.metric_results = None def _update_job(self): # We need the job id to be able to update job information. There is no need # to update the job if we are in a known terminal state. if self.has_job and not self.is_in_terminal_state(): self._job = self._runner.dataflow_client.get_job(self.job_id()) def job_id(self): return self._job.id def metrics(self): return self.metric_results @property def has_job(self): return self._job is not None def _get_job_state(self): values_enum = dataflow_api.Job.CurrentStateValueValuesEnum # TODO: Move this table to a another location. # Ordered by the enum values. api_jobstate_map = { values_enum.JOB_STATE_UNKNOWN: PipelineState.UNKNOWN, values_enum.JOB_STATE_STOPPED: PipelineState.STOPPED, values_enum.JOB_STATE_RUNNING: PipelineState.RUNNING, values_enum.JOB_STATE_DONE: PipelineState.DONE, values_enum.JOB_STATE_FAILED: PipelineState.FAILED, values_enum.JOB_STATE_CANCELLED: PipelineState.CANCELLED, values_enum.JOB_STATE_UPDATED: PipelineState.UPDATED, values_enum.JOB_STATE_DRAINING: PipelineState.DRAINING, values_enum.JOB_STATE_DRAINED: PipelineState.DRAINED, values_enum.JOB_STATE_PENDING: PipelineState.PENDING, values_enum.JOB_STATE_CANCELLING: PipelineState.CANCELLING, } return (api_jobstate_map[self._job.currentState] if self._job.currentState else PipelineState.UNKNOWN) @property def state(self): """Return the current state of the remote job. Returns: A PipelineState object. """ if not self.has_job: return PipelineState.UNKNOWN self._update_job() return self._get_job_state() def is_in_terminal_state(self): if not self.has_job: return True return PipelineState.is_terminal(self._get_job_state()) def wait_until_finish(self, duration=None): if not self.is_in_terminal_state(): if not self.has_job: raise IOError('Failed to get the Dataflow job id.') thread = threading.Thread( target=DataflowRunner.poll_for_job_completion, args=(self._runner, self, duration)) # Mark the thread as a daemon thread so a keyboard interrupt on the main # thread will terminate everything. This is also the reason we will not # use thread.join() to wait for the polling thread. thread.daemon = True thread.start() while thread.isAlive(): time.sleep(5.0) # TODO: Merge the termination code in poll_for_job_completion and # is_in_terminal_state. terminated = self.is_in_terminal_state() assert duration or terminated, ( 'Job did not reach to a terminal state after waiting indefinitely.') if terminated and self.state != PipelineState.DONE: # TODO(BEAM-1290): Consider converting this to an error log based on # theresolution of the issue. raise DataflowRuntimeException( 'Dataflow pipeline failed. State: %s, Error:\n%s' % (self.state, getattr(self._runner, 'last_error_msg', None)), self) return self.state def cancel(self): if not self.has_job: raise IOError('Failed to get the Dataflow job id.') self._update_job() if self.is_in_terminal_state(): logging.warning( 'Cancel failed because job %s is already terminated in state %s.', self.job_id(), self.state) else: if not self._runner.dataflow_client.modify_job_state( self.job_id(), 'JOB_STATE_CANCELLED'): cancel_failed_message = ( 'Failed to cancel job %s, please go to the Developers Console to ' 'cancel it manually.') % self.job_id() logging.error(cancel_failed_message) raise DataflowRuntimeException(cancel_failed_message, self) return self.state def __str__(self): return '<%s %s %s>' % ( self.__class__.__name__, self.job_id(), self.state) def __repr__(self): return '<%s %s at %s>' % (self.__class__.__name__, self._job, hex(id(self))) class DataflowRuntimeException(Exception): """Indicates an error has occurred in running this pipeline.""" def __init__(self, msg, result): super(DataflowRuntimeException, self).__init__(msg) self.result = result